VOL. 6 · NO. 2 | June 2012
 
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Frontmatter
Ann. Appl. Stat. 6 (2), (June 2012)
No abstract available
Ann. Appl. Stat. 6 (2), (June 2012)
No abstract available
Special Section on Statistical Methods for Next-Generation Gene Sequencing Data
Karen Kafadar
Ann. Appl. Stat. 6 (2), 429-431, (June 2012) DOI: 10.1214/12-AOAS558
KEYWORDS: High-throughput sequencing data, differential gene expression, phenotype, missing data, copy number variant, single nucleotide polymorphism, Bayesian hierarchical model, Bayesian model averaging
No abstract available
Zhen Li, Vikneswaran Gopal, Xiaobo Li, John M. Davis, George Casella
Ann. Appl. Stat. 6 (2), 432-456, (June 2012) DOI: 10.1214/11-AOAS516
KEYWORDS: hierarchical models, Bayes models, Gibbs sampling, genome-wide association
Baiyu Zhou, Alice S. Whittemore
Ann. Appl. Stat. 6 (2), 457-475, (June 2012) DOI: 10.1214/11-AOAS527
KEYWORDS: Genotype calls, human genome sequencing, linkage disequilibrium, pedigrees
Jeremy J. Shen, Nancy R. Zhang
Ann. Appl. Stat. 6 (2), 476-496, (June 2012) DOI: 10.1214/11-AOAS517
KEYWORDS: Copy number, CNV, change point, inhomogeneous Poisson process, point-wise confidence interval
Xi Kathy Zhou, Fei Liu, Andrew J. Dannenberg
Ann. Appl. Stat. 6 (2), 497-520, (June 2012) DOI: 10.1214/11-AOAS526
KEYWORDS: Bayesian model averaging, differential gene expression, microarray, observational study
Loki Natarajan, Minya Pu, Karen Messer
Ann. Appl. Stat. 6 (2), 521-541, (June 2012) DOI: 10.1214/11-AOAS510
KEYWORDS: concordance, validation, gene-ranking, Meta-analysis, rank based methods, gene expression analysis, microarray, next generation sequencing, Cancer
Donatello Telesca, Peter Müller, Giovanni Parmigiani, Ralph S. Freedman
Ann. Appl. Stat. 6 (2), 542-560, (June 2012) DOI: 10.1214/11-AOAS525
KEYWORDS: Conditional independence, microarray data, probability of expression, probit models, reciprocal graphs, reversible jumps MCMC
Articles
Laurent Jacob, Pierre Neuvial, Sandrine Dudoit
Ann. Appl. Stat. 6 (2), 561-600, (June 2012) DOI: 10.1214/11-AOAS528
KEYWORDS: differential expression, biological networks, pathways, enrichment analysis, two-sample test, Hotelling T2, spectral graph theory, graph Laplacian, dimensionality reduction
Chong Liu, Surajit Ray, Giles Hooker, Mark Friedl
Ann. Appl. Stat. 6 (2), 601-624, (June 2012) DOI: 10.1214/11-AOAS518
KEYWORDS: Factor rotation, variance decomposition, Functional data analysis, covariance surface, remote sensing, principal periodic components
Brian M. Hartman, Bani K. Mallick, Debabrata Talukdar
Ann. Appl. Stat. 6 (2), 625-651, (June 2012) DOI: 10.1214/11-AOAS519
KEYWORDS: New product diffusion, hierarchical Bayesian methods, logistic diffusion
Tyler H. McCormick, Cynthia Rudin, David Madigan
Ann. Appl. Stat. 6 (2), 652-668, (June 2012) DOI: 10.1214/11-AOAS522
KEYWORDS: Association rule mining, healthcare surveillance, hierarchical model, machine learning
Oleksandr Gromenko, Piotr Kokoszka, Lie Zhu, Jan Sojka
Ann. Appl. Stat. 6 (2), 669-696, (June 2012) DOI: 10.1214/11-AOAS524
KEYWORDS: Ionospheric trends, Functional data analysis, spatial statistics
Yu Ryan Yue, Martin A. Lindquist, Ji Meng Loh
Ann. Appl. Stat. 6 (2), 697-718, (June 2012) DOI: 10.1214/11-AOAS523
KEYWORDS: Binary response, Data augmentation, fMRI, Gaussian Markov random fields, Markov chain Monte Carlo, Meta-analysis, Spatially adaptive smoothing
Xi Chen, Qihang Lin, Seyoung Kim, Jaime G. Carbonell, Eric P. Xing
Ann. Appl. Stat. 6 (2), 719-752, (June 2012) DOI: 10.1214/11-AOAS514
KEYWORDS: Sparse regression, structured sparsity, smoothing, proximal gradient, optimization
Guangyu Zhang, Ying Yuan
Ann. Appl. Stat. 6 (2), 753-771, (June 2012) DOI: 10.1214/11-AOAS515
KEYWORDS: Dyadic data, missing data, nonignorable dropout, selection model
Polly Phipps, Daniell Toth
Ann. Appl. Stat. 6 (2), 772-794, (June 2012) DOI: 10.1214/11-AOAS521
KEYWORDS: recursive partitioning, nonignorable nonresponse, propensity model, establishment survey, Classification and Regression Trees (CART)
Julien Chiquet, Yves Grandvalet, Camille Charbonnier
Ann. Appl. Stat. 6 (2), 795-830, (June 2012) DOI: 10.1214/11-AOAS520
KEYWORDS: Penalization, Sparsity, grouped variables, ordinal variables, continuous variables, sign-coherence, microarray analysis
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