VOL. 4 · NO. 2 | June 2010
 
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Frontmatter
Ann. Appl. Stat. 4 (2), (June 2010)
No abstract available
Ann. Appl. Stat. 4 (2), (June 2010)
No abstract available
Special Section on Network Modeling
Stephen E. Fienberg
Ann. Appl. Stat. 4 (2), 533-534, (June 2010) DOI: 10.1214/10-AOAS365
No abstract available
Eric P. Xing, Wenjie Fu, Le Song
Ann. Appl. Stat. 4 (2), 535-566, (June 2010) DOI: 10.1214/09-AOAS311
KEYWORDS: Dynamic networks, Network tomography, mixed membership stochastic blockmodels, state-space models, Time-varying networks, mixed membership model, Graphical model, variational inference, Bayesian inference, Social network, gene regulation network
Tom A. B. Snijders, Johan Koskinen, Michael Schweinberger
Ann. Appl. Stat. 4 (2), 567-588, (June 2010) DOI: 10.1214/09-AOAS313
KEYWORDS: Graphs, longitudinal data, method of moments, stochastic approximation, Robbins–Monro algorithm
Ya Xu, Justin S. Dyer, Art B. Owen
Ann. Appl. Stat. 4 (2), 589-614, (June 2010) DOI: 10.1214/09-AOAS293
KEYWORDS: graph Laplacian, kriging, PageRank, Random walk
Ricardo Silva, Katherine Heller, Zoubin Ghahramani, Edoardo M. Airoldi
Ann. Appl. Stat. 4 (2), 615-644, (June 2010) DOI: 10.1214/09-AOAS321
KEYWORDS: network analysis, Bayesian inference, variational approximation, ranking, information retrieval, data integration, Saccharomyces cerevisiae
Nicholas A. Heard, David J. Weston, Kiriaki Platanioti, David J. Hand
Ann. Appl. Stat. 4 (2), 645-662, (June 2010) DOI: 10.1214/10-AOAS329
KEYWORDS: Dynamic networks, Bayesian inference, counting processes, hurdle models
Gareth M. James, Chiara Sabatti, Nengfeng Zhou, Ji Zhu
Ann. Appl. Stat. 4 (2), 663-686, (June 2010) DOI: 10.1214/10-AOAS350
KEYWORDS: Transcription regulation networks, L_1 penalty, E. coli, sparse network
Hugo Zanghi, Franck Picard, Vincent Miele, Christophe Ambroise
Ann. Appl. Stat. 4 (2), 687-714, (June 2010) DOI: 10.1214/10-AOAS359
KEYWORDS: Graph clustering, EM Algorithms, online strategies, web graph structure analysis
Mahendra Mariadassou, Stéphane Robin, Corinne Vacher
Ann. Appl. Stat. 4 (2), 715-742, (June 2010) DOI: 10.1214/10-AOAS361
KEYWORDS: Ecological networks, host–parasite interactions, latent structure, mixture model, random graph, valued graph, variational method
Articles
Anat Sakov, Ilan Golani, Dina Lipkind, Yoav Benjamini
Ann. Appl. Stat. 4 (2), 743-763, (June 2010) DOI: 10.1214/09-AOAS304
KEYWORDS: robustness, LOWESS, path data, behavior genetics, Outliers, regression quantile, running median, boundary estimation, center estimation
Genevera I. Allen, Robert Tibshirani
Ann. Appl. Stat. 4 (2), 764-790, (June 2010) DOI: 10.1214/09-AOAS314
KEYWORDS: Matrix-variate normal, Covariance estimation, imputation, EM algorithm, transposable data
Michael R. Huber, Rodney X. Sturdivant
Ann. Appl. Stat. 4 (2), 791-804, (June 2010) DOI: 10.1214/09-AOAS301
KEYWORDS: exponential distribution, Poisson process, memoryless property, rare baseball events, Goodness-of-fit test
Dipankar Bandyopadhyay, Debajyoti Sinha, Stuart Lipsitz, Elizabeth Letourneau
Ann. Appl. Stat. 4 (2), 805-829, (June 2010) DOI: 10.1214/09-AOAS295
KEYWORDS: Bridge density, Change-point, Dirichlet prior, Markov chain Monte Carlo
John Hughes, John Fricks, William Hancock
Ann. Appl. Stat. 4 (2), 830-848, (June 2010) DOI: 10.1214/09-AOAS299
KEYWORDS: Maximum likelihood methods, Poisson random field, fluorescence microscopy, particle tracking, organelle, Molecular motor, nanotechnology
Carrie A. Hosman, Ben B. Hansen, Paul W. Holland
Ann. Appl. Stat. 4 (2), 849-870, (June 2010) DOI: 10.1214/09-AOAS315
KEYWORDS: Causal inference, hidden bias, observational study
Audrey Qiuyan Fu, Diane P. Genereux, Reinhard Stöger, Charles D. Laird, Matthew Stephens
Ann. Appl. Stat. 4 (2), 871-892, (June 2010) DOI: 10.1214/09-AOAS297
KEYWORDS: Bayesian inference, DNA methylation, transmission fidelity, epigenetics, hairpin-bisulfite PCR, hierarchical models, Markov chain Monte Carlo (MCMC), measurement error, multi-site models, stationarity
Woncheol Jang, Ji Meng Loh
Ann. Appl. Stat. 4 (2), 893-915, (June 2010) DOI: 10.1214/09-AOAS307
KEYWORDS: Bandwidth selection, grouped data, kernel density estimator, line transect sampling, smoothed bootstrap
Kristin P. Lennox, David B. Dahl, Marina Vannucci, Ryan Day, Jerry W. Tsai
Ann. Appl. Stat. 4 (2), 916-942, (June 2010) DOI: 10.1214/09-AOAS296
KEYWORDS: Bayesian nonparametrics, Density estimation, dihedral angles, Protein structure prediction, torsion angles, von Mises distribution
Kimberly F. Sellers, Galit Shmueli
Ann. Appl. Stat. 4 (2), 943-961, (June 2010) DOI: 10.1214/09-AOAS306
KEYWORDS: Conway–Maxwell-Poisson (COM-Poisson) distribution, dispersion, generalized linear models (GLM), generalized Poisson
Qunhua Li, Michael J. MacCoss, Matthew Stephens
Ann. Appl. Stat. 4 (2), 962-987, (June 2010) DOI: 10.1214/09-AOAS316
KEYWORDS: mixture model, nested structure, EM algorithm, protein identification, peptide identification, mass spectrometry, proteomics
Xiaodan Fan, Saumyadipta Pyne, Jun S. Liu
Ann. Appl. Stat. 4 (2), 988-1013, (June 2010) DOI: 10.1214/09-AOAS300
KEYWORDS: cell cycle, periodically expressed gene, microarray time series, Meta-analysis, fission yeast, Schizosaccharomyces pombe, Markov chain Monte Carlo
Wei Sun, Fred A. Wright
Ann. Appl. Stat. 4 (2), 1014-1033, (June 2010) DOI: 10.1214/09-AOAS298
KEYWORDS: Permutation p-value, gene expression quantitative trait loci (eQTL), effective number of independent tests
Maria L. Rizzo, Gábor J. Székely
Ann. Appl. Stat. 4 (2), 1034-1055, (June 2010) DOI: 10.1214/09-AOAS245
KEYWORDS: Distance components, DISCO, multisample problem, test equal distributions, multivariate, nonparametric MANOVA extension
Martin Slawski, Wolfgang zu Castell, Gerhard Tutz
Ann. Appl. Stat. 4 (2), 1056-1080, (June 2010) DOI: 10.1214/09-AOAS302
KEYWORDS: generalized linear model, regularization, Sparsity, p ≫ n, Lasso, Elastic net, Random fields, Model selection, signal regression
Stergios B. Fotopoulos, Venkata K. Jandhyala, Elena Khapalova
Ann. Appl. Stat. 4 (2), 1081-1104, (June 2010) DOI: 10.1214/09-AOAS294
KEYWORDS: Ladder epochs, likelihood ratio, maximum likelihood estimate, random walk with negative drift
Jan van den Brakel, Joeri Roels
Ann. Appl. Stat. 4 (2), 1105-1138, (June 2010) DOI: 10.1214/09-AOAS305
KEYWORDS: intervention analysis, response bias, structural time series models, survey sampling
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