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2021 The Attraction Indian Buffet Distribution
Richard L. Warr, David B. Dahl, Jeremy M. Meyer, Arthur Lui
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Bayesian Anal. Advance Publication 1-37 (2021). DOI: 10.1214/21-BA1279

Abstract

We propose the attraction Indian buffet distribution (AIBD), a distribution for binary feature matrices influenced by pairwise similarity information. Binary feature matrices are used in Bayesian models to uncover latent variables (i.e., features) that explain observed data. The Indian buffet process (IBP) is a popular exchangeable prior distribution for latent feature matrices. In the presence of additional information, however, the exchangeability assumption is not reasonable or desirable. The AIBD can incorporate pairwise similarity information, yet it preserves many properties of the IBP, including the distribution of the total number of features. Thus, much of the interpretation and intuition that one has for the IBP directly carries over to the AIBD. A temperature parameter controls the degree to which the similarity information affects feature-sharing between observations. Unlike other nonexchangeable distributions for feature allocations, the probability mass function of the AIBD has a tractable normalizing constant, making posterior inference on hyperparameters straight-forward using standard MCMC methods. A novel posterior sampling algorithm is proposed for the IBP and the AIBD. We demonstrate the feasibility of the AIBD as a prior distribution in feature allocation models and compare the performance of competing methods in simulations and an application.

Funding Statement

This work was supported, in part, by NIH NIGMS R01 GM104972.

Acknowledgments

The authors thank the editor, associate editor, and two anonymous referees for their insightful comments that substantially improved this work.

Citation

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Richard L. Warr. David B. Dahl. Jeremy M. Meyer. Arthur Lui. "The Attraction Indian Buffet Distribution." Bayesian Anal. Advance Publication 1 - 37, 2021. https://doi.org/10.1214/21-BA1279

Information

Published: 2021
First available in Project Euclid: 28 July 2021

arXiv: 2106.05403
Digital Object Identifier: 10.1214/21-BA1279

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