Electronic Journal of Statistics

Estimation of a non-parametric variable importance measure of a continuous exposure

Antoine Chambaz, Pierre Neuvial, and Mark J. van der Laan

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Abstract

We define a new measure of variable importance of an exposure on a continuous outcome, accounting for potential confounders. The exposure features a reference level $x_{0}$ with positive mass and a continuum of other levels. For the purpose of estimating it, we fully develop the semi-parametric estimation methodology called targeted minimum loss estimation methodology (TMLE) [23,22]. We cover the whole spectrum of its theoretical study (convergence of the iterative procedure which is at the core of the TMLE methodology; consistency and asymptotic normality of the estimator), practical implementation, simulation study and application to a genomic example that originally motivated this article. In the latter, the exposure $X$ and response $Y$ are, respectively, the DNA copy number and expression level of a given gene in a cancer cell. Here, the reference level is $x_{0}=2$, that is the expected DNA copy number in a normal cell. The confounder is a measure of the methylation of the gene. The fact that there is no clear biological indication that $X$ and $Y$ can be interpreted as an exposure and a response, respectively, is not problematic.

Article information

Source
Electron. J. Statist., Volume 6 (2012), 1059-1099.

Dates
First available in Project Euclid: 22 June 2012

Permanent link to this document
https://projecteuclid.org/euclid.ejs/1340369355

Digital Object Identifier
doi:10.1214/12-EJS703

Mathematical Reviews number (MathSciNet)
MR2988439

Zentralblatt MATH identifier
1295.62029

Subjects
Primary: 62G05: Estimation 62G20: Asymptotic properties 62G35: Robustness 62P10: Applications to biology and medical sciences

Keywords
Variable importance measure non-parametric estimation targeted minimum loss estimation robustness asymptotics

Citation

Chambaz, Antoine; Neuvial, Pierre; van der Laan, Mark J. Estimation of a non-parametric variable importance measure of a continuous exposure. Electron. J. Statist. 6 (2012), 1059--1099. doi:10.1214/12-EJS703. https://projecteuclid.org/euclid.ejs/1340369355


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