Open Access
September 2019 Sequential Monte Carlo Samplers with Independent Markov Chain Monte Carlo Proposals
L. F. South, A. N. Pettitt, C. C. Drovandi
Bayesian Anal. 14(3): 753-776 (September 2019). DOI: 10.1214/18-BA1129

Abstract

Sequential Monte Carlo (SMC) methods for sampling from the posterior of static Bayesian models are flexible, parallelisable and capable of handling complex targets. However, it is common practice to adopt a Markov chain Monte Carlo (MCMC) kernel with a multivariate normal random walk (RW) proposal in the move step, which can be both inefficient and detrimental for exploring challenging posterior distributions. We develop new SMC methods with independent proposals which allow recycling of all candidates generated in the SMC process and are embarrassingly parallelisable. A novel evidence estimator that is easily computed from the output of our independent SMC is proposed. Our independent proposals are constructed via flexible copula-type models calibrated with the population of SMC particles. We demonstrate through several examples that more precise estimates of posterior expectations and the marginal likelihood can be obtained using fewer likelihood evaluations than the more standard RW approach.

Citation

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L. F. South. A. N. Pettitt. C. C. Drovandi. "Sequential Monte Carlo Samplers with Independent Markov Chain Monte Carlo Proposals." Bayesian Anal. 14 (3) 753 - 776, September 2019. https://doi.org/10.1214/18-BA1129

Information

Published: September 2019
First available in Project Euclid: 11 June 2019

zbMATH: 1421.62059
MathSciNet: MR3960770
Digital Object Identifier: 10.1214/18-BA1129

Keywords: copula , evidence , importance sampling , independent proposal , marginal likelihood , Markov chain Monte Carlo

Vol.14 • No. 3 • September 2019
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