Electronic Journal of Statistics

Bayesian adaptive B-spline estimation in proportional hazards frailty models

Emmanuel Sharef, Robert L. Strawderman, David Ruppert, Mark Cowen, and Lakshmi Halasyamani
Source: Electron. J. Statist. Volume 4 (2010), 606-642.

Abstract

Frailty models derived from the proportional hazards regression model are frequently used to analyze clustered right-censored survival data. We propose a semiparametric Bayesian methodology for this purpose, modeling both the unknown baseline hazard and density of the random effects using mixtures of B-splines. The posterior distributions for all regression coefficients and spline parameters are obtained using Markov Chain Monte Carlo (MCMC). The methodology permits the use of weighted mixtures of parametric and nonparametric components in modeling the hazard function and frailty distribution; in addition, the spline knots may also be selected adaptively using reversible-jump MCMC. Simulations indicate that the method produces smooth and accurate posterior hazard and frailty density estimates. The Bayesian approach not only produces point estimators that outperform existing approaches in certain circumstances, but also offers a wealth of information about the parameters of interest in the form of MCMC samples from the joint posterior probability distribution. We illustrate the adaptability of the method with data from a study of congestive heart failure.

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Permanent link to this document: http://projecteuclid.org/euclid.ejs/1278439436
Digital Object Identifier: doi:10.1214/10-EJS566
Mathematical Reviews number (MathSciNet): MR2660535

References

Andersen, P. K., Borgan, Ø., Gill, R. D. and Keiding, N. (1993)., Statistical models based on counting processes. Springer Series in Statistics. Springer-Verlag, New York.
Mathematical Reviews (MathSciNet): MR1198884
Aslanidou, H., Dey, D. K. and Sinha, D. (1998). Bayesian Analysis of Multivariate Survival Data Using Monte Carlo Methods., The Canadian Journal of Statistics / La Revue Canadienne de Statistique 26 33–48.
Mathematical Reviews (MathSciNet): MR1624365
Digital Object Identifier: doi:10.2307/3315671
Averill, R. F., McCullough, E. C., Hughes, J. S., Goldfield, N. I., Vertrees, J. C. and Fuller, R. L. (2009). Redesigning the Medicare inpatient PPS to reduce payments to hospitals with high readmission rates., Health Care Financ Rev 30 1–15.
Barker, P. and Henderson, R. (2005). Small Sample Bias in the Gamma Frailty Model for Univariate Survival., Lifetime Data Analysis 11.
Mathematical Reviews (MathSciNet): MR2158785
Digital Object Identifier: doi:10.1007/s10985-004-0387-7
Biller, C. (2000). Adaptive Bayesian Regression Splines in Semiparametric Generalized Linear Models., Journal of Computational and Graphical Statistics 9 122–140.
Mathematical Reviews (MathSciNet): MR1819868
Clayton, D. G. (1991). A Monte Carlo Method for Bayesian Inference in Frailty Models., Biometrics 47 467–485.
Clayton, D. and Cuzick, J. (1985). Multivariate Generalizations of the Proportional Hazards Model., Journal of the Royal Statistical Society. Series A 148 82–117.
Mathematical Reviews (MathSciNet): MR806480
Digital Object Identifier: doi:10.2307/2981943
Cox, D. R. (1972). Regression models and life-tables., J. Roy. Statist. Soc. Ser. B 34 187–220.
Mathematical Reviews (MathSciNet): MR341758
Cox, D. R. (1975). Partial Likelihood., Biometrika 62 269–276.
Mathematical Reviews (MathSciNet): MR400509
Zentralblatt MATH: 0312.62002
Digital Object Identifier: doi:10.1093/biomet/62.2.269
Cujec, B., Quan, H., Jin, Y. and Johnson, D. (2005). Association between physician specialty and volumes of treated patients and mortality among patients hospitalized for newly diagnosed heart failure., Am J Med 118 35–44.
de Boor, C. (2001)., A Practical Guide to Splines. Applied Mathematical Sciences 27. Springer.
Mathematical Reviews (MathSciNet): MR1900298
Denison, D. G. T., Mallick, B. K. and Smith, A. F. M. (1998). Automatic Bayesian curve fitting., Journal of the Royal Statistical Society: Series B (Statistical Methodology) 60 333–350.
Mathematical Reviews (MathSciNet): MR1616029
Zentralblatt MATH: 0907.62031
Digital Object Identifier: doi:10.1111/1467-9868.00128
DiMatteo, I., Genovese, C. R. and Kass, R. E. (2001). Bayesian curve-fitting with free-knot splines., Biometrika 88 1055–1071.
Mathematical Reviews (MathSciNet): MR1872219
Zentralblatt MATH: 0986.62026
Digital Object Identifier: doi:10.1093/biomet/88.4.1055
Fisher, L. D., Dixon, D. O., Herson, J., Frankowski, R. F., Hearron, M. S. and Peace, K. E. (1990). Intention to Treat in Clinical Trials. In, Statistical Issues in Drug Research and Development (Karl E. Peace, Editor) 331–350. Marcel Dekker, New York.
Gelman, A., Carlin, J. B., Stern, H. S. and Rubin, D. B. (2004)., Bayesian Data Analysis. Chapman and Hall/CRC.
Mathematical Reviews (MathSciNet): MR2027492
Ghidey, W., Lesaffre, E. and Eilers, P. (2004). Smooth Random Effects Distribution in a Linear Mixed Model., Biometrics 60 945–953.
Mathematical Reviews (MathSciNet): MR2133547
Digital Object Identifier: doi:10.1111/j.0006-341X.2004.00250.x
Ghosh, J. K., Delampady, M. and Samanta, T. (2006)., An Introduction to Bayesian Analysis: Theory and Methods. Springer-Verlag.
Mathematical Reviews (MathSciNet): MR2247439
Zentralblatt MATH: 1135.62002
Green, P. J. (1995). Reversible Jump Markov Chain Monte Carlo Computation and Bayesian Model Determination., Biometrika 82 711–732.
Mathematical Reviews (MathSciNet): MR1380810
Zentralblatt MATH: 0861.62023
Digital Object Identifier: doi:10.1093/biomet/82.4.711
Halasyamani, L. K., Valenstein, P. N., Friedlander, M. P. and Cowen, M. E. (2005). A comparison of two hospitalist models with traditional care in a community teaching hospital., Am J Med 118 536–543.
Hjort, N. L. and Glad, I. K. (1995). Nonparametric density estimation with a parametric start., Ann. Statist. 23 882–904.
Mathematical Reviews (MathSciNet): MR1345205
Zentralblatt MATH: 0838.62027
Digital Object Identifier: doi:10.1214/aos/1176324627
Project Euclid: euclid.aos/1176324627
Hjort, N. L. and Jones, M. C. (1996). Locally parametric nonparametric density estimation., Ann. Statist. 24 1619–1647.
Mathematical Reviews (MathSciNet): MR1416653
Zentralblatt MATH: 0867.62030
Digital Object Identifier: doi:10.1214/aos/1032298288
Project Euclid: euclid.aos/1032298288
Ibrahim, J. G., Chen, M.-H. and Sinha, D. (2001)., Bayesian survival analysis. Springer Series in Statistics. Springer-Verlag, New York.
Mathematical Reviews (MathSciNet): MR1876598
Jencks, S. F., Williams, M. V. and Coleman, E. A. (2009). Rehospitalizations among patients in the Medicare fee-for-service program., N Engl J Med 360 1418–1428.
Jong, P., Gong, Y., Liu, P. P. et al. (2003). Care and outcomes of patients newly hospitalized for heart failure in the community treated by cardiologists compared with other specialists., Circulation 108 184–191.
Keenan, P. S., Normand, S.-L. T., Lin, Z., Drye, E. E., Bhat, K. R., Ross, J. S., Schuur, J. D., Stauffer, B. D., Bernheim, S. M., Epstein, A. J., Wang, Y., Herrin, J., Chen, J., Federer, J. J., Mattera, J. A., Wang, Y. and Krumholz, H. M. (2008). An administrative claims measure suitable for profiling hospital performance on the basis of 30-day all-cause readmission rates among patients with heart failure., Circ Cardiovasc Qual Outcomes 1 29–37.
Komárek, A. (2006). Accelerated Failure Time Models for Multivariate Interval-Censored Data with Flexible Distributional Assumptions PhD thesis, Katholieke Universiteit, Leuven.
Komárek, A. and Lesaffre, E. (2008). Bayesian Accelerated Failure Time Model with Multivariate Doubly-Interval-Censored Data and Flexible Distributional Assumptions., Journal of the American Statistical Association 103 523–533.
Mathematical Reviews (MathSciNet): MR2523990
Zentralblatt MATH: 05564507
Digital Object Identifier: doi:10.1198/016214507000000563
Kooperberg, C., Stone, C. J. and Truong, Y. K. (1995). Hazard Regression., Journal of the American Statistical Association 90 78–94.
Mathematical Reviews (MathSciNet): MR1325116
Zentralblatt MATH: 0818.62097
Digital Object Identifier: doi:10.1080/01621459.1995.10476491
Kosorok, M. R., Lee, B. L. and Fine, J. P. (2004). Robust inference for univariate proportional hazards frailty regression models., Ann. Statist. 32 1448–1491.
Mathematical Reviews (MathSciNet): MR2089130
Zentralblatt MATH: 1047.62090
Digital Object Identifier: doi:10.1214/009053604000000535
Project Euclid: euclid.aos/1091626175
LeBlanc, M. and Crowley, J. (1999). Adaptive Regression Splines in the Cox Model., Biometrics 55 204–213.
Lindstrom, M. J. (2002). Bayesian estimation of free-knot splines using reversible jumps., Computational Statistics & Data Analysis 41 255–269.
Mathematical Reviews (MathSciNet): MR1945871
Mallick, B. K., Denison, D. G. T. and Smith, A. F. M. (1999). Bayesian Survival Analysis Using a MARS Model., Biometrics, 55 1071–1077.
Müller, P. and Quintana, F. A. (2004). Nonparametric Bayesian Data Analysis., Statist. Sci. 19 95–110.
Mathematical Reviews (MathSciNet): MR2082149
Digital Object Identifier: doi:10.1214/088342304000000017
Project Euclid: euclid.ss/1089808275
Naskar, M. (2008). Semiparametric analysis of clustered survival data under nonparametric frailty., Stat Neer 62 155–172.
Mathematical Reviews (MathSciNet): MR2427867
Digital Object Identifier: doi:10.1111/j.1467-9574.2007.00372.x
Nielsen, G. G., Sørensen, T. I. A., Gill, R. D. and Andersen, P. K. (1992). A Counting Process Approach to Maximum Likelihood Estimation in Frailty Models., Scandinavian Journal of Statistics 19 25–43.
Mathematical Reviews (MathSciNet): MR1172965
Pan, W. (2001). Using Frailties in the Accelerated Failure Time Model., Lifetime Data Analysis 7 55–64.
Mathematical Reviews (MathSciNet): MR1836201
Digital Object Identifier: doi:10.1023/A:1009625210191
Robert, C. P. and Casella, G. (2004)., Monte Carlo Statistical Methods. Springer Series in Statistics. Springer, New York.
Mathematical Reviews (MathSciNet): MR2080278
Ross, J. S., Mulvey, G. K., Stauffer, B., Patlolla, V., Bernheim, S. M., Keenan, P. S. and Krumholz, H. M. (2008). Statistical models and patient predictors of readmission for heart failure: a systematic review., Arch Intern Med 168 1371–1386.
Ruppert, D., Nettleton, D. and Hwang, J. T. G. (2007). Exploring the Information in p-Values for the Analysis and Planning of Multiple-Test Experiments., Biometrics 63 483–495.
Mathematical Reviews (MathSciNet): MR2370807
Digital Object Identifier: doi:10.1111/j.1541-0420.2006.00704.x
Sharef, E. (2008). Nonparametric Frailty Models for Clustered Survival Data PhD thesis, Cornell, University.
Mathematical Reviews (MathSciNet): MR2712655
Sharef, E., Strawderman, R. L., Ruppert, D., Cowen, M. and Halasyamani, L. (2010). Supplement to “Bayesian Adaptive B-spline Estimation in Proportional Hazards Frailty Models.” DOI:, 10.1214/10-EJS566SUPP.
Mathematical Reviews (MathSciNet): MR2660535
Digital Object Identifier: doi:10.1214/10-EJS566
Project Euclid: euclid.ejs/1278439436
Smith, M. and Kohn, R. (1996). Nonparametric regression using Bayesian variable selection., Journal of Econometrics 75 317–343.
Spiegelhalter, D. J., Best, N. G., Carlin, B. P. and van der Linde, A. (2002). Bayesian measures of model complexity and fit., J. R. Stat. Soc. Ser. B Stat. Methodol. 64 583–639.
Mathematical Reviews (MathSciNet): MR1979380
Zentralblatt MATH: 1067.62010
Digital Object Identifier: doi:10.1111/1467-9868.00353
Staudenmayer, J., Ruppert, D. and Buonaccorsi, J. P. (2008). Density estimation in the presence of heteroskedastic measurement error., Journal of the American Statistical Association 103 726–736.
Mathematical Reviews (MathSciNet): MR2524005
Zentralblatt MATH: 05564526
Digital Object Identifier: doi:10.1198/016214508000000328
Therneau, T. M. and Grambsch, P. M. (2000)., Modeling Survival Data: Extending the Cox Model. Springer.
Mathematical Reviews (MathSciNet): MR1774977
Zentralblatt MATH: 0958.62094
Walker, S. G. and Mallick, B. K. (1997). Hierarchical Generalized Linear Models and Frailty Models with Bayesian Nonparametric Mixing., Journal of the Royal Statistical Society. Series B (Methodological) 59 845–860.
Mathematical Reviews (MathSciNet): MR1483219
Digital Object Identifier: doi:10.1111/1467-9868.00101

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